Stem-loop bra-MIR161

Accession

MI0030578

Description

Brassica rapa bra-MIR161 precursor miRNA

Gene family

MIPF0000455; MIR161

Literature search

3 open access papers mention bra-MIR161
(7 sentences)

Sequence

uuuauugcuucgaUCAAUGCACUGAAAGUGACUAcaucagcauuuguuuuuaagcuuucgcucucaucuauaugaugaagaugaaaauuagccucugauguaGUCACUUUCAAUGCGUUGAUCauagcaug
.....((((..((((((((((.((((((((((((((((((.....((((((((((....))).(((((.....)))))...)))))))......)))))))))))))))))).))))))))))..))))..

Structure

uuuau    uc          C                  -cauuu       agcuuucgcuc     u 
     ugcu  gaUCAAUGCA UGAAAGUGACUAcaucag      guuuuua           ucauc a
     ||||  |||||||||| ||||||||||||||||||      |||||||           ||||| u
     acga  CUAGUUGCGU ACUUUCACUGauguaguc      uaaaagu           aguag a
---gu    ua          A                  uccgau       --------aga     u 

Annotation confidence Not enough data

Genome context

chrA5: 12400028-12400158 [-]

Mature bra-miR161-5p

• Accession: MIMAT0035878
• Description: Brassica rapa bra-miR161-5p mature miRNA
• Sequence: 14 - UCAAUGCACUGAAAGUGACUA - 34
• Evidence: experimental ; Illumina [1]

Mature bra-miR161-3p

• Accession: MIMAT0035879
• Description: Brassica rapa bra-miR161-3p mature miRNA
• Sequence: 103 - GUCACUUUCAAUGCGUUGAUC - 123
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146