miRBase entry: chi-mir-34b

Stem-loop chi-mir-34b


Accession
MI0030758
Description
Capra hircus chi-mir-34b precursor miRNA
Gene family
MIPF0000039; mir-34

Literature search
5 open access papers mention chi-mir-34b
(7 sentences)

Sequence

gcccggugcucgguuuguAGGCAGUGUAAUUAGCUGAUUGUacucucaugcuuacAAUCACUAGUUCCACUGCCAUCaaaacaaggcacagcaucacccgccgccc
((...(((((..((((...(((((((.((((((.((((((((..(....)..)))))))))))))).)))))))....))))..))))).))..............

Structure
--------------  ccg     cg    -guA       U      C        cu u 
              gc   gugcu  guuu    GGCAGUG AAUUAG UGAUUGUa  c c
              ||   |||||  ||||    ||||||| |||||| ||||||||  |  
              cg   cacgg  caaa    CCGUCAC UUGAUC ACUAAcau  g a
cccgccgcccacua  --a     aa    aCUA       C      -        uc u 


Annotation confidence Not enough data
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Genome context
chr15: 21772625-21772730 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from chi-mir-34b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature chi-miR-34b-5p

Accession MIMAT0036167
Description Capra hircus chi-miR-34b-5p mature miRNA
Sequence 19 - AGGCAGUGUAAUUAGCUGAUUGU - 41
Evidence experimental
Illumina [1]

Mature chi-miR-34b-3p

Accession MIMAT0036168
Description Capra hircus chi-miR-34b-3p mature miRNA
Sequence 56 - AAUCACUAGUUCCACUGCCAUC - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23981187
    Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
    "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
    "Reprod Domest Anim (2014) 49:32-40