Stem-loop chi-mir-433

Accession

MI0030793

Description

Capra hircus chi-mir-433 precursor miRNA

Literature search

1 open access papers mention chi-mir-433
(1 sentences)

Sequence

acccaguggccggggagaaguacggugagccugucauuguucagagaggcuagauccuccuuguugagaaggAUCAUGAUGGGCUCCUCGGUGUucuccagguagcggcaccacaccaugaaggcagccc
.....((.(((..((((((...(((.(((((((((((...............((((((.(((...))).))))))))))))))))).)))...)))))).))).))(((.((..........))..))).

Structure

-------------------accca  g   gg      gua   u           uguucagagaggcua      c   g 
                        gu gcc  ggagaa   cgg gagccugucau               gauccu cuu  
                        || |||  ||||||   ||| |||||||||||               |||||| ||| u
                        cg ugg  ccucuU   GCU CUCGGGUAGUA               CUAgga gag  
cccgacggaaguaccacaccacgg  a   -a      GUG   C           ---------------      a   u 

Annotation confidence Not enough data

Genome context

chr21: 66962261-66962390 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from chi-mir-433

Mature chi-miR-433

• Accession: MIMAT0036229
• Description: Capra hircus chi-miR-433 mature miRNA
• Sequence: 73 - AUCAUGAUGGGCUCCUCGGUGU - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40