miRBase entry: dsi-mir-2499

Stem-loop dsi-mir-2499

Accession

MI0030862

Description

Drosophila simulans dsi-mir-2499 precursor miRNA

Sequence

AGGCGUGGACGUCAGCACAAUGCCuuuguuuggcggcAUGUGGAUGACGUUCAUGUCCA
.(((((((((((((.((((.((((..........))))))))..)))))))))))))..

Structure

-A             -G    A    uuug 
  GGCGUGGACGUCA  CACA UGCC    u
  |||||||||||||  |||| ||||     
  CUGUACUUGCAGU  GUGU Acgg    u
AC             AG    -    cggu

Annotation confidence Not enough data

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Genome context

chrX: 15016882-15016940 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from dsi-mir-2499

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dsi-miR-2499-5p

Accession	MIMAT0039122
Description	Drosophila simulans dsi-miR-2499-5p mature miRNA
Sequence	1 - AGGCGUGGACGUCAGCACAAUGCC - 24
Evidence	experimental Illumina [1]

Mature dsi-miR-2499-3p

Accession	MIMAT0039123
Description	Drosophila simulans dsi-miR-2499-3p mature miRNA
Sequence	38 - AUGUGGAUGACGUUCAUGUCCA - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250