miRBase entry: dse-mir-2498b

Stem-loop dse-mir-2498b

Accession

MI0030863

Description

Drosophila sechellia dse-mir-2498b precursor miRNA

Sequence

AAAAAGUCUGUUAUGCUAAUGUUguguguuuaacaaaCUUGGCACAACCGCUUUUUAUu
(((((((..(((.((((((.(((.(((.....)))))))))))).))).)))))))...

Structure

---       CU   A      U   g   g 
   AAAAAGU  GUU UGCUAA GUU ugu u
   |||||||  ||| |||||| ||| ||| u
   UUUUUCG  CAA ACGGUU Caa aca u
uUA       -C   C      -   -   a

Annotation confidence Not enough data

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Genome context

scaffold_1: 14026439-14026497 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dse-mir-2498b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-2498b-5p

Accession	MIMAT0039124
Description	Drosophila sechellia dse-miR-2498b-5p mature miRNA
Sequence	1 - AAAAAGUCUGUUAUGCUAAUGUU - 23
Evidence	experimental Illumina [1]

Mature dse-miR-2498b-3p

Accession	MIMAT0039125
Description	Drosophila sechellia dse-miR-2498b-3p mature miRNA
Sequence	38 - CUUGGCACAACCGCUUUUUAU - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250