miRBase entry: dse-mir-973

Stem-loop dse-mir-973

Accession

MI0030878

Description

Drosophila sechellia dse-mir-973 precursor miRNA

Sequence

cGGGGUUGGUGGUUGAACUUCGAuuuuagguauuuaaauaagauaaAUCUGUUCAUUCUUCGACCCAAa
..(((((((.((.(((((...(((((....(((....)))....))))).))))).)).)))))))...

Structure

-cG       U  U     UUC     uagg   u 
   GGGUUGG GG UGAAC   GAuuu    uau u
   ||||||| || |||||   |||||    |||  
   CCCAGCU CU ACUUG   CUAaa    aua a
aAA       U  U     --U     uaga   a

Annotation confidence Not enough data

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Genome context

scaffold_8: 1727993-1728061 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from dse-mir-973

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-973-5p

Accession	MIMAT0039141
Description	Drosophila sechellia dse-miR-973-5p mature miRNA
Sequence	2 - GGGGUUGGUGGUUGAACUUCGA - 23
Evidence	experimental Illumina [1]

Mature dse-miR-973-3p

Accession	MIMAT0039142
Description	Drosophila sechellia dse-miR-973-3p mature miRNA
Sequence	47 - AUCUGUUCAUUCUUCGACCCAA - 68
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250