miRBase entry: dse-mir-4966-1

Stem-loop dse-mir-4966-1

Accession

MI0030880

Description

Drosophila sechellia dse-mir-4966-1 precursor miRNA

Sequence

UACUAAAUAUAUUGCACAUGUUcauacauguucauacaUGUAAAACAUAUUUAGCACUCa
..((((((((.((..((((((..............))))))..)).))))))))......

Structure

----UA        A  GC      Ucauac 
      CUAAAUAU UU  ACAUGU      a
      |||||||| ||  ||||||       
      GAUUUAUA AA  UGUaca      u
aCUCAC        C  AA      uacuug

Annotation confidence Not enough data

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Genome context

scaffold_8: 1734680-1734739 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from dse-mir-4966-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-4966-5p

Accession	MIMAT0039144
Description	Drosophila sechellia dse-miR-4966-5p mature miRNA
Sequence	1 - UACUAAAUAUAUUGCACAUGUU - 22
Evidence	experimental Illumina [1]

Mature dse-miR-4966-3p

Accession	MIMAT0039145
Description	Drosophila sechellia dse-miR-4966-3p mature miRNA
Sequence	39 - UGUAAAACAUAUUUAGCACUC - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250