miRBase entry: dse-mir-974

Stem-loop dse-mir-974

Accession

MI0030886

Description

Drosophila sechellia dse-mir-974 precursor miRNA

Sequence

AAGCGAGCAAAGAAGUAGUAUUugcguuuccaagaacaaaUAUAACUUCUUUGAAAGCUAGGu
.(((...(((((((((.(((((((............))))))).)))))))))...)))....

Structure

---A   GAG         A       cguuu 
    AGC   CAAAGAAGU GUAUUug     c
    |||   ||||||||| |||||||      
    UCG   GUUUCUUCA UAUaaac     c
uGGA   AAA         A       aagaa

Annotation confidence Not enough data

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Genome context

scaffold_8: 1728136-1728198 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from dse-mir-974

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-974-5p

Accession	MIMAT0039149
Description	Drosophila sechellia dse-miR-974-5p mature miRNA
Sequence	1 - AAGCGAGCAAAGAAGUAGUAUU - 22
Evidence	experimental Illumina [1]

Mature dse-miR-974-3p

Accession	MIMAT0039150
Description	Drosophila sechellia dse-miR-974-3p mature miRNA
Sequence	41 - UAUAACUUCUUUGAAAGCUAGG - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250