miRBase entry: dse-mir-9680

Stem-loop dse-mir-9680

Accession

MI0030891

Description

Drosophila sechellia dse-mir-9680 precursor miRNA

Sequence

AAUUUCUUCAAGCCGAAGGUCUuuguuaauuugauuagAAUUCUGUGCGAAGAAAUUUUu
(((((((((..((.(((..(((..((((...)))).))).))).))..)))))))))...

Structure

---         AA  C   GG   uu    a 
   AAUUUCUUC  GC GAA  UCU  guua  
   |||||||||  || |||  |||  |||| u
   UUAAAGAAG  UG CUU  Aga  uagu  
uUU         CG  U   -A   -u    u

Annotation confidence Not enough data

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Genome context

scaffold_8: 1718473-1718532 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from dse-mir-9680

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-9680-5p

Accession	MIMAT0039158
Description	Drosophila sechellia dse-miR-9680-5p mature miRNA
Sequence	1 - AAUUUCUUCAAGCCGAAGGUCU - 22
Evidence	experimental Illumina [1]

Mature dse-miR-9680-3p

Accession	MIMAT0039159
Description	Drosophila sechellia dse-miR-9680-3p mature miRNA
Sequence	39 - AAUUCUGUGCGAAGAAAUUUU - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250