Stem-loop dse-mir-9685

Accession

MI0030893

Description

Drosophila sechellia dse-mir-9685 precursor miRNA

Sequence

UCGACGUCGACGCAGUGUUCGcugcugccaccgcUGCUGCACUCGCCGACGUCAGu
..(((((((.((.(((((..((.((.......)).)).))))))).)))))))...

Structure

-UC       A  C     UC  u  ug 
   GACGUCG CG AGUGU  Gc gc  c
   ||||||| || |||||  || ||  c
   CUGCAGC GC UCACG  CG cg  a
uGA       C  -     -U  U  cc 

Annotation confidence Not enough data

Genome context

scaffold_0: 15993641-15993696 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from dse-mir-9685

Mature dse-miR-9685-5p

• Accession: MIMAT0039162
• Description: Drosophila sechellia dse-miR-9685-5p mature miRNA
• Sequence: 1 - UCGACGUCGACGCAGUGUUCG - 21
• Evidence: experimental ; Illumina [1]

Mature dse-miR-9685-3p

• Accession: MIMAT0039163
• Description: Drosophila sechellia dse-miR-9685-3p mature miRNA
• Sequence: 35 - UGCUGCACUCGCCGACGUCAG - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250