miRBase entry: der-mir-978

Stem-loop der-mir-978

Accession

MI0030927

Description

Drosophila erecta der-mir-978 precursor miRNA

Sequence

gugggcggcacaaccagCAUUCUACGCCGCUGGCUUACGUuguacucgaaaaucGUGUCCAGUGCCGUUGAUUGCaauuguguggacgcaaa
(((..(.((((((...(((.((.(((.((((((..((((..............)))).)))))).))).)).)))..)))))).).)))...

Structure

---   gg g      cca   U  U   C      CU    Uuguac 
   gug  c gcacaa   gCA UC ACG CGCUGG  UACG      u
   |||  | ||||||   ||| || ||| ||||||  ||||       
   cgc  g uguguu   CGU AG UGC GUGACC  GUGc      c
aaa   -a g      -aa   U  U   C      -U    uaaaag

Annotation confidence Not enough data

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Genome context

scaffold_4690: 9691198-9691289 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from der-mir-978

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature der-miR-978-5p

Accession	MIMAT0039212
Description	Drosophila erecta der-miR-978-5p mature miRNA
Sequence	18 - CAUUCUACGCCGCUGGCUUACGU - 40
Evidence	experimental Illumina [1]

Mature der-miR-978-3p

Accession	MIMAT0039213
Description	Drosophila erecta der-miR-978-3p mature miRNA
Sequence	55 - GUGUCCAGUGCCGUUGAUUGC - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250