miRBase entry: der-mir-973

Stem-loop der-mir-973

Accession

MI0030930

Description

Drosophila erecta der-mir-973 precursor miRNA

Sequence

CGUGGUUGGUGGCUGAACUUAGauuuugaguauucaaauaaaauaaaUCUGUUCAUUCCUCGACACAAGaa
.(((.((((.((.(((((..((((((....(((....)))....)))))))))))..))))))))).....

Structure

----C   G    U  -C     UU      ugag   u 
     GUG UUGG GG  UGAAC  AGauuu    uau c
     ||| |||| ||  |||||  ||||||    |||  
     CAC AGCU CC  ACUUG  UCUaaa    aua a
aaGAA   -    -  UU     --      uaaa   a

Annotation confidence Not enough data

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Genome context

scaffold_4690: 9682325-9682395 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from der-mir-973

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature der-miR-973-5p

Accession	MIMAT0039218
Description	Drosophila erecta der-miR-973-5p mature miRNA
Sequence	1 - CGUGGUUGGUGGCUGAACUUAG - 22
Evidence	experimental Illumina [1]

Mature der-miR-973-3p

Accession	MIMAT0039219
Description	Drosophila erecta der-miR-973-3p mature miRNA
Sequence	48 - UCUGUUCAUUCCUCGACACAAG - 69
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250