miRBase entry: dvi-mir-9696b

Stem-loop dvi-mir-9696b

Accession

MI0030938

Description

Drosophila virilis dvi-mir-9696b precursor miRNA

Sequence

aAAAGGCCCUUUCAGACUGUUAUcuaugacuagucaaaaaaugcacauAGCAGUCGAAAAGGGCCUUUCGc
.(((((((((((..(((((((((...((.(............))).)))))))))..)))))))))))...

Structure

--a           CA         cua  a uaguc 
   AAAGGCCCUUU  GACUGUUAU   ug c     a
   |||||||||||  |||||||||   || |      
   UUUCCGGGAAA  CUGACGAua   ac g     a
cGC           AG         --c  - uaaaa

Annotation confidence Not enough data

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Genome context

scaffold_13042: 903198-903268 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from dvi-mir-9696b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-9696b-5p

Accession	MIMAT0039234
Description	Drosophila virilis dvi-miR-9696b-5p mature miRNA
Sequence	2 - AAAGGCCCUUUCAGACUGUUAU - 23
Evidence	experimental Illumina [1]

Mature dvi-miR-9696b-3p

Accession	MIMAT0039235
Description	Drosophila virilis dvi-miR-9696b-3p mature miRNA
Sequence	49 - AGCAGUCGAAAAGGGCCUUUCG - 70
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250