miRBase entry: dvi-mir-9701b

Stem-loop dvi-mir-9701b

Accession

MI0030947

Description

Drosophila virilis dvi-mir-9701b precursor miRNA

Sequence

CGGUGAACCACAUCAAUUUUCUuaauugaguuucuaaaugcagAAAGUUGAUGGUGGUACACAGc
..(((.((((((((((((((((..(((.........)))..))))))))))).))))).)))...

Structure

-CG   A     -           ua   gag 
   GUG ACCAC AUCAAUUUUCU  auu   u
   ||| ||||| |||||||||||  |||   u
   CAC UGGUG UAGUUGAAAga  uaa   u
cGA   A     G           cg   auc

Annotation confidence Not enough data

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Genome context

scaffold_12855: 6284353-6284417 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from dvi-mir-9701b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-9701b-5p

Accession	MIMAT0039252
Description	Drosophila virilis dvi-miR-9701b-5p mature miRNA
Sequence	1 - CGGUGAACCACAUCAAUUUUCU - 22
Evidence	experimental Illumina [1]

Mature dvi-miR-9701b-3p

Accession	MIMAT0039253
Description	Drosophila virilis dvi-miR-9701b-3p mature miRNA
Sequence	44 - AAAGUUGAUGGUGGUACACAG - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250