miRBase entry: dvi-mir-9704-2

Stem-loop dvi-mir-9704-2

Accession

MI0030955

Description

Drosophila virilis dvi-mir-9704-2 precursor miRNA

Sequence

ccggaugaaccgUGCAAAUUGUUUUUCGUAUUACuuauuucaauuauguUGAACGGGAAACAAUUUGUGuagcuugccuggagaagcaaccuaaa
.(((.....))).((((((((((((((((...((.((.......)).))...)))))))))))))))).(((.((((........)))).)))..

Structure

--------------ccggaugaaccgU                AUU  u  uu 
                           GCAAAUUGUUUUUCGU   AC ua  u
                           ||||||||||||||||   || ||  c
                           UGUUUAACAAAGGGCA   ug au  a
aaauccaacgaagagguccguucgauG                AGU  u  ua

Annotation confidence Not enough data

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Genome context

scaffold_12963: 329857-329951 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dvi-mir-9704-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-9704-5p

Accession	MIMAT0039258
Description	Drosophila virilis dvi-miR-9704-5p mature miRNA
Sequence	13 - UGCAAAUUGUUUUUCGUAUUAC - 34
Evidence	experimental Illumina [1]

Mature dvi-miR-9704-2-3p

Accession	MIMAT0039268
Description	Drosophila virilis dvi-miR-9704-2-3p mature miRNA
Sequence	50 - UGAACGGGAAACAAUUUGUG - 69
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250