miRBase entry: dvi-mir-9708c

Stem-loop dvi-mir-9708c

Accession

MI0030962

Description

Drosophila virilis dvi-mir-9708c precursor miRNA

Sequence

UGAGCACAGCUAAACAUAUAAUuuuuuuuuuacaaguucuUAUGUGUGUUAGCUGGGCUCAUGa
(((((.(((((((((((((((...(((......)))...)))))))).))))))).)))))...

Structure

---     A       -        Uuu   uu 
   UGAGC CAGCUAA ACAUAUAA   uuu  u
   ||||| ||||||| ||||||||   |||   
   ACUCG GUCGAUU UGUGUAUu   gaa  u
aGU     G       G        cuu   ca

Annotation confidence Not enough data

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Genome context

scaffold_13042: 2032606-2032669 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from dvi-mir-9708c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-9708c-5p

Accession	MIMAT0039273
Description	Drosophila virilis dvi-miR-9708c-5p mature miRNA
Sequence	1 - UGAGCACAGCUAAACAUAUAAU - 22
Evidence	experimental Illumina [1]

Mature dvi-miR-9708c-3p

Accession	MIMAT0039274
Description	Drosophila virilis dvi-miR-9708c-3p mature miRNA
Sequence	41 - UAUGUGUGUUAGCUGGGCUCAUG - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250