miRBase entry: dvi-mir-9708d

Stem-loop dvi-mir-9708d

Accession

MI0030963

Description

Drosophila virilis dvi-mir-9708d precursor miRNA

Sequence

UGAUCGCGUCUAAGACAUAUAAuuuauacuugacuuAUAUGCAGUAGAUGUGAUCGCGu
.(((((((((((...(((((((.(((....))).)))))))...)))))))))))....

Structure

---U           AGA       u   u 
    GAUCGCGUCUA   CAUAUAA uua a
    |||||||||||   ||||||| |||  
    CUAGUGUAGAU   GUAUAuu agu c
uGCG           GAC       c   u

Annotation confidence Not enough data

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Genome context

scaffold_13042: 2032476-2032534 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from dvi-mir-9708d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-9708d-5p

Accession	MIMAT0039275
Description	Drosophila virilis dvi-miR-9708d-5p mature miRNA
Sequence	1 - UGAUCGCGUCUAAGACAUAUAA - 22
Evidence	experimental Illumina [1]

Mature dvi-miR-9708d-3p

Accession	MIMAT0039276
Description	Drosophila virilis dvi-miR-9708d-3p mature miRNA
Sequence	37 - AUAUGCAGUAGAUGUGAUCGCG - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250