miRBase entry: dvi-mir-9544b

Stem-loop dvi-mir-9544b

Accession

MI0030965

Description

Drosophila virilis dvi-mir-9544b precursor miRNA

Sequence

UGCGCGGCGGCUCUUUUAACGaguguaacaaaaacucgUUAUAAAAGACCACUGUGCAAau
(((((((.((.(((((((((((((.........))))))..))))))))).)))))))...

Structure

---       C  C       --      gua 
   UGCGCGG GG UCUUUUA  ACGagu   a
   ||||||| || |||||||  ||||||   c
   ACGUGUC CC AGAAAAU  Ugcuca   a
uaA       A  -       AU      aaa

Annotation confidence Not enough data

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Genome context

scaffold_12970: 9429010-9429070 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from dvi-mir-9544b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-9544b-5p

Accession	MIMAT0039279
Description	Drosophila virilis dvi-miR-9544b-5p mature miRNA
Sequence	1 - UGCGCGGCGGCUCUUUUAACG - 21
Evidence	experimental Illumina [1]

Mature dvi-miR-9544b-3p

Accession	MIMAT0039280
Description	Drosophila virilis dvi-miR-9544b-3p mature miRNA
Sequence	39 - UUAUAAAAGACCACUGUGCAA - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250