miRBase entry: dvi-mir-9541a

Stem-loop dvi-mir-9541a

Accession

MI0030968

Description

Drosophila virilis dvi-mir-9541a precursor miRNA

Sequence

UAGCAUAGUAGAUCUCUUAACCgagcauaaaaagaaaaccgGUUUAGGAGAACUACUGUGCUUa
.((((((((((.(((((((((((................))).)))))))).))))))))))..

Structure

-U          A        -   agcauaa 
  AGCAUAGUAG UCUCUUAA CCg       a
  |||||||||| |||||||| |||        
  UCGUGUCAUC AGAGGAUU Ggc       a
aU          A        U   caaaaga

Annotation confidence Not enough data

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Genome context

scaffold_12970: 9428406-9428469 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from dvi-mir-9541a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-9541a-5p

Accession	MIMAT0039285
Description	Drosophila virilis dvi-miR-9541a-5p mature miRNA
Sequence	1 - UAGCAUAGUAGAUCUCUUAACC - 22
Evidence	experimental Illumina [1-2]

Mature dvi-miR-9541a-3p

Accession	MIMAT0039286
Description	Drosophila virilis dvi-miR-9541a-3p mature miRNA
Sequence	42 - GUUUAGGAGAACUACUGUGCUU - 63
Evidence	experimental Illumina [1-2]

References

PubMed ID: 24448446
Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"RNA (2014) 20:360-372

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250