Stem-loop ata-MIR171c

Accession

MI0031652

Description

Aegilops tauschii ata-MIR171c precursor miRNA

Sequence

aggggagugaacgCGGUAUUGGUGCGGUUCAAUCagagagcuggugccccaggaggcaagggguuccucccuucgaUUGAGCCGUGCCAAUAUCACGcgguuucuc
.(((((.((..((.((((((((((((((((((((.(((.(..((.(((((.........))))).))..)))).)))))))))))))))))))).)))).))))).

Structure

a     g  aa  C                    a   a cu  u     agg 
 gggga ug  cg GGUAUUGGUGCGGUUCAAUC gag g  gg gcccc   a
 ||||| ||  || |||||||||||||||||||| ||| |  || |||||   g
 ucuuu gc  GC CUAUAACCGUGCCGAGUUag uuc c  cc ugggg   g
c     g  --  A                    c   - cu  u     aac 

Annotation confidence Low

Genome context

chr2: 484289195-484289300 [-]

Mature ata-miR171c-5p

• Accession: MIMAT0037100
• Description: Aegilops tauschii ata-miR171c-5p mature miRNA
• Sequence: 14 - CGGUAUUGGUGCGGUUCAAUC - 34
• Evidence: experimental ; Illumina [1]

Mature ata-miR171c-3p

• Accession: MIMAT0037101
• Description: Aegilops tauschii ata-miR171c-3p mature miRNA
• Sequence: 77 - UUGAGCCGUGCCAAUAUCACG - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95