Stem-loop pal-let-7a-2

Accession

MI0032518

Description

Pteropus alecto pal-let-7a-2 precursor miRNA

Literature search

1 open access papers mention pal-let-7a-2
(1 sentences)

Sequence

UGAGGUAGUAGGUUGUAUAGUUuagaauugcaucaagggagauaaCUGUACAGCCUCCUAGCUUUCC
.(((.(((.(((((((((((((.....((.(.....).))...))))))))))))).))).)))...

Structure

--U   G   U             uagaa  g a 
   GAG UAG AGGUUGUAUAGUU     uu c u
   ||| ||| |||||||||||||     || | c
   UUC AUC UCCGACAUGUCaa     ag g a
CCU   G   C             --uag  g a 

Annotation confidence Low

Genome context

KB031151.1: 1553649-1553715 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pal-let-7a-2

Mature pal-let-7a-5p

• Accession: MIMAT0039772
• Description: Pteropus alecto pal-let-7a-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature pal-let-7a-2-3p

• Accession: MIMAT0040148
• Description: Pteropus alecto pal-let-7a-2-3p mature miRNA
• Sequence: 46 - CUGUACAGCCUCCUAGCUUUCC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682