Stem-loop sequence ola-mir-33

AccessionMI0019456 (change log)
DescriptionOryzias latipes miR-33 stem-loop
Gene family MIPF0000070; mir-33
Literature search

1 open access papers mention ola-mir-33
(2 sentences)

Stem-loop
   -------c  -    ag   cag          u          gua  u 
5'         gg ccag  cug   ugcauuguag ugcauugcau   ug u
           || ||||  |||   |||||||||| ||||||||||   || u
3'         cc gguc  gac   acgugacguc auguaacgug   ac c
   gucaaaca  a    ga   aca          c          -aa  u 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (MEDAKA1) Overlapping transcripts
8: 12694467-12694560 [+]
sense
ENSORLT00000026102 ; ola-mir-33-201; exon 1
ENSORLT00000011833 ; srebf1-201; intron 18
Database links

Mature sequence ola-miR-33

Accession MIMAT0022576
Sequence

54 - 

caauguaccugcagugcaa

 - 72

Get sequence
Evidence experimental; SOLiD [1]

References

1
PMID:21143817 "Discovery and characterization of medaka miRNA genes by next generation sequencing platform" Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC BMC Genomics. 11 Suppl 4:S8(2010).