Stem-loop sequence ppc-mir-8348

AccessionMI0027054 (change log)
DescriptionPristionchus pacificus miR-8348 stem-loop
Stem-loop
   --    c   u   ga        -a - au 
5'   acuc gag uuc  ucgggaac  g c  a
     |||| ||| |||  ||||||||  | |   
3'   ugag cuc aag  agcccuug  c g  u
   ac    a   u   -a        ag a ag 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (El_Paco; GCA_000180635.3) Overlapping transcripts
ABKE03000073.1: 226430-226488 [+]
intergenic
Clustered miRNAs
< 10kb from ppc-mir-8348
ppc-mir-2272ABKE03000073.1: 220023-220140 [+]
ppc-mir-8263ABKE03000073.1: 220213-220275 [+]
ppc-mir-2273ABKE03000073.1: 220330-220428 [+]
ppc-mir-8223ABKE03000073.1: 220630-220686 [+]
ppc-mir-2267ABKE03000073.1: 220769-220883 [+]
ppc-mir-8351ABKE03000073.1: 225677-225741 [+]
ppc-mir-8299ABKE03000073.1: 226063-226119 [+]
ppc-mir-8348ABKE03000073.1: 226430-226488 [+]
ppc-mir-8282bABKE03000073.1: 226545-226603 [+]
ppc-mir-8282aABKE03000073.1: 226753-226811 [+]
ppc-mir-8282cABKE03000073.1: 227223-227281 [+]
ppc-mir-8358ABKE03000073.1: 227347-227413 [+]
ppc-mir-8320ABKE03000073.1: 227746-227804 [+]
ppc-mir-8274ABKE03000073.1: 234904-234962 [-]
ppc-mir-8307ABKE03000073.1: 235868-235928 [-]
ppc-mir-8356bABKE03000073.1: 236097-236161 [-]
ppc-mir-8356aABKE03000073.1: 236205-236266 [-]
Database links

Mature sequence ppc-miR-8348-5p

Accession MIMAT0033244
Sequence

1 - 

acuccgaguuucgaucgggaac

 - 22

Get sequence
Evidence experimental; Illumina [1]

Mature sequence ppc-miR-8348-3p

Accession MIMAT0033245
Sequence

39 - 

ucccgaagaaucucagaguca

 - 59

Get sequence
Evidence experimental; Illumina [1]

References

1
PMID:23729632 "Conserved miRNAs are candidate post-transcriptional regulators of developmental arrest in free-living and parasitic nematodes" Ahmed R, Chang Z, Younis AE, Langnick C, Li N, Chen W, Brattig N, Dieterich C Genome Biol Evol. 5:1246-1260(2013).