Stem-loop gga-mir-200a

Accession

MI0001249

Description

Gallus gallus gga-mir-200a precursor miRNA mir-8

Gene
family

RF00241; mir-8

Literature search

17 open access papers mention gga-mir-200a
(31 sentences)

Sequence

72069 reads, 1057 reads per million, 5 experiments

gguccucugugggCAUCUUACUAGACAGUGCUGGAuuucuuggaucuauucUAACACUGUCUGGUAACGAUGUuuaaagggugaacc
((((((((.(((((((((((((((((((((.((((..............)))).))))))))))))).)))))))).)))).).)))

Structure

   - -    g        -             C    uuucuu 
ggu c cucu ugggCAUC UUACUAGACAGUG UGGA      g
||| | |||| |||||||| ||||||||||||| ||||       
cca g ggga auuUGUAG AAUGGUCUGUCAC AUcu      g
   a u    a        C             A    uaucua 

Annotation confidence High

Genome context

chr21: 2591937-2592023 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gga-mir-200a

Mature gga-miR-200a-3p

• Accession: MIMAT0001171
• Description: Gallus gallus gga-miR-200a-3p mature miRNA
• Sequence: 52 - UAACACUGUCUGGUAACGAUGU - 73
• Evidence: experimental ; Illumina [2]

Mature gga-miR-200a-5p

• Accession: MIMAT0026533
• Description: Gallus gallus gga-miR-200a-5p mature miRNA
• Sequence: 14 - CAUCUUACUAGACAGUGCUGGA - 35
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45