Stem-loop gga-mir-34a

Accession

MI0001251

Description

Gallus gallus gga-mir-34a precursor miRNA mir-34

Gene
family

RF00456; mir-34

Literature search

16 open access papers mention gga-mir-34a
(52 sentences)

Sequence

2745 reads, 50 reads per million, 5 experiments

gccagcugugaguguuucuuUGGCAGUGUCUUAGCUGGUUGUUgugagcaauaguuaaggaagCAAUCAGCAAGUAUACUGCCCUAgaagugcuacacauuguugggcc
.((((((((((((((((((..(((((((((((.((((((((((...(((....))).....))))))))))))).))))))))..))))))))).))))..)))))...

Structure

--g     --    -         uU        -   A          --gug   a 
   ccagc  ugug aguguuucu  GGCAGUGU CUU GCUGGUUGUU     agc a
   |||||  |||| |||||||||  |||||||| ||| ||||||||||     |||  
   gguug  acac ucgugaagA  CCGUCAUA GAA CGACUAACga     uug u
ccg     uu    a         UC        U   -          aggaa   a 

Annotation confidence Not enough data

Genome context

chr21: 3262992-3263100 [-]

Mature gga-miR-34a-5p

• Accession: MIMAT0001173
• Description: Gallus gallus gga-miR-34a-5p mature miRNA
• Sequence: 21 - UGGCAGUGUCUUAGCUGGUUGUU - 43
• Evidence: experimental ; cloned [2], Illumina [3]

Mature gga-miR-34a-3p

• Accession: MIMAT0026535
• Description: Gallus gallus gga-miR-34a-3p mature miRNA
• Sequence: 64 - CAAUCAGCAAGUAUACUGCCCUA - 86
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45