Stem-loop mdo-mir-101-1

Accession

MI0005283

Description

Monodelphis domestica mdo-mir-101-1 precursor miRNA

Sequence

788597 reads, 12529 reads per million, 5 experiments

aggcugcccuggcUCAGUUAUCACAGUGCUGAUGCUguccguucucaaggUACAGUACUGUGAUAACUGAAGgauggcagcca
.(((((((.....((((((((((((((((((.((((............)))))))))))))))))))))).....))))))).

Structure

a       cuggc                  A    guccg 
 ggcugcc     UCAGUUAUCACAGUGCUG UGCU     u
 |||||||     |||||||||||||||||| ||||      
 ccgacgg     AGUCAAUAGUGUCAUGAC AUgg     u
a       uagGA                  -    aacuc 

Annotation confidence High

Genome context

chr2: 26267862-26267944 [+]

Mature mdo-miR-101-3p

• Accession: MIMAT0004098
• Description: Monodelphis domestica mdo-miR-101-3p mature miRNA
• Sequence: 51 - UACAGUACUGUGAUAACUGAAG - 72
• Evidence: experimental ; Illumina [2]

Mature mdo-miR-101-1-5p

• Accession: MIMAT0031076
• Description: Monodelphis domestica mdo-miR-101-1-5p mature miRNA
• Sequence: 14 - UCAGUUAUCACAGUGCUGAUGCU - 36
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45