Stem-loop mdo-mir-107

Accession

MI0005286

Description

Monodelphis domestica mdo-mir-107 precursor miRNA

Sequence

4079 reads, 74 reads per million, 5 experiments

cuucuuucugcuuucggcuucucuacaguguugccuuguggcguggaguucaAGCAGCAUUGUACAGGGCUAUCAaagcauaga
..(((...((((((.((((.((.(((((((((((.(((.(((.....))))))))))))))))).))))))...)))))).)))

Structure

cu   uuc      --c    u  c           c   u   g 
  ucu   ugcuuu   ggcu cu uacaguguugc uug ggc u
  |||   ||||||   |||| || ||||||||||| ||| ||| g
  aga   acgaaA   UCGG GA AUGUUACGACG Aac uug g
--   --u      CUA    -  C           -   -   a 

Annotation confidence Not enough data

Genome context

chr1: 81981106-81981189 [+]

Mature mdo-miR-107

• Accession: MIMAT0004100
• Description: Monodelphis domestica mdo-miR-107 mature miRNA
• Sequence: 53 - AGCAGCAUUGUACAGGGCUAUCA - 75
• Evidence: experimental ; Microarray [1], PCR [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72