Stem-loop mdo-mir-124a-1

Accession

MI0005288

Description

Monodelphis domestica mdo-mir-124a-1 precursor miRNA

Sequence

141588 reads, 3546 reads per million, 4 experiments

aggccucucucuccGUGUUCACAGCGGACCUUGAUuuaaauguccauacaaUUAAGGCACGCGGUGAAUGCCAagaauggggcug
.((((((..(((..((((((((.(((..((((((((.............))))))))..))).))))))))..)))..)))))).

Structure

a      uc   cc        A   GA        uaaau 
 ggccuc  ucu  GUGUUCAC GCG  CCUUGAUu     g
 ||||||  |||  |||||||| |||  ||||||||     u
 ucgggg  aga  CGUAAGUG CGC  GGAAUUaa     c
g      ua   AC        G   AC        cauac 

Annotation confidence High

Genome context

chr1: 587846264-587846348 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-124a-1

Mature mdo-miR-124a-3p

• Accession: MIMAT0004102
• Description: Monodelphis domestica mdo-miR-124a-3p mature miRNA
• Sequence: 52 - UUAAGGCACGCGGUGAAUGCCA - 73
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-124a-5p

• Accession: MIMAT0026660
• Description: Monodelphis domestica mdo-miR-124a-5p mature miRNA
• Sequence: 15 - GUGUUCACAGCGGACCUUGAU - 35
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45