Stem-loop mdo-mir-181a-3

Accession

MI0005310

Description

Monodelphis domestica mdo-mir-181a-3 precursor miRNA

Sequence

1489707 reads, 26516 reads per million, 5 experiments

ugggggAACAUUCAACGCUGUCGGUGAGUuugagcagcugaaggcaaaCCAUCGACCGUUGAGUGGACCccg
..((((..(((((((((..(((((((.(((((............)))))))))))))))))))))..)))).

Structure

ug    AA         CU       A     agcag 
  gggg  CAUUCAACG  GUCGGUG GUuug     c
  ||||  |||||||||  ||||||| |||||      
  ccCC  GUGAGUUGC  CAGCUAC Caaac     u
-g    AG         --       -     ggaag 

Annotation confidence High

Genome context

chr3: 446461502-446461573 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-181a-3

Mature mdo-miR-181a-5p

• Accession: MIMAT0004154
• Description: Monodelphis domestica mdo-miR-181a-5p mature miRNA
• Sequence: 7 - AACAUUCAACGCUGUCGGUGAGU - 29
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-181a-3-3p

• Accession: MIMAT0031039
• Description: Monodelphis domestica mdo-miR-181a-3-3p mature miRNA
• Sequence: 49 - CCAUCGACCGUUGAGUGGACC - 69
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45