Stem-loop mdo-mir-214

Accession

MI0005319

Description

Monodelphis domestica mdo-mir-214 precursor miRNA

Sequence

367 reads, 10 reads per million, 5 experiments

gggcuggcuggacggaguugucaugugucUGCCUGUCUACACUUGCUGUGCagaacauccucucaccuguACAGCAGGCACAGACAGGCAGucacaugacaacccagccu
.....((((((.....(((((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).))))))))))))))))).

Structure

gggcu      acgga           u          ACA            aacau 
     ggcugg     guugucaugug cUGCCUGUCU   CUUGCUGUGCag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     u
----u      -----           u          CAC            cacuc 

Annotation confidence Not enough data

Genome context

chr2: 64368078-64368187 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-214

Mature mdo-miR-214-3p

• Accession: MIMAT0004130
• Description: Monodelphis domestica mdo-miR-214-3p mature miRNA
• Sequence: 71 - ACAGCAGGCACAGACAGGCAG - 91
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-214-5p

• Accession: MIMAT0026679
• Description: Monodelphis domestica mdo-miR-214-5p mature miRNA
• Sequence: 30 - UGCCUGUCUACACUUGCUGUGC - 51
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45