Stem-loop mdo-mir-183

Accession

MI0005335

Description

Monodelphis domestica mdo-mir-183 precursor miRNA

Sequence

14169 reads, 216 reads per million, 5 experiments

acuccuguucugugUAUGGCACUGGUAGAAUUCACUGugaaaacacacuaucagUGAAUUACCAAAGGGCCAUAAAcagagcagagaa
..(((((((((((.((((((..(((((..((((((((..(........)..)))))))))))))....)))))).))))))))).)).

Structure

ac  -         g      --AC     GA        ug aaa 
  uc cuguucugu UAUGGC    UGGUA  AUUCACUG  a   c
  || ||||||||| ||||||    |||||  ||||||||  |    
  ag gacgagacA AUACCG    ACCAU  UAAGUgac  u   a
-a  a         A      GGAA     --        ua cac 

Annotation confidence Not enough data

Genome context

chr8: 189668265-189668352 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdo-mir-183

Mature mdo-miR-183-5p

• Accession: MIMAT0004146
• Description: Monodelphis domestica mdo-miR-183-5p mature miRNA
• Sequence: 15 - UAUGGCACUGGUAGAAUUCACUG - 37
• Evidence: experimental ; PCR [1], Illumina [2]

Mature mdo-miR-183-3p

• Accession: MIMAT0026691
• Description: Monodelphis domestica mdo-miR-183-3p mature miRNA
• Sequence: 55 - UGAAUUACCAAAGGGCCAUAAA - 76
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45