Stem-loop mdo-mir-212

Accession

MI0005337

Description

Monodelphis domestica mdo-mir-212 precursor miRNA

Sequence

4040 reads, 85 reads per million, 5 experiments

gggcagcgcgccggcACCUUGGCUCUAGACUGCUUACUgcccgggccacccucagUAACAGUCUCCAGUCACGGCCaccgacgccuggccc
((.(((.(((.(((..((.(((((..((((((.((((((...(((...))).))))))))))))..))))).))...))).)))))).)).

Structure

-  g   c   c   -cA  U     CU      C      ccc   c 
 gg cag gcg cgg   CC UGGCU  AGACUG UUACUg   ggg  
 || ||| ||| |||   || |||||  |||||| ||||||   ||| c
 cc guc cgc gcc   GG ACUGA  UCUGAC AAUgac   ccc  
c  g   -   a   aCC  C     CC      -      --u   a 

Annotation confidence High

Genome context

chr2: 517587363-517587453 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-212

Mature mdo-miR-212-3p

• Accession: MIMAT0004148
• Description: Monodelphis domestica mdo-miR-212-3p mature miRNA
• Sequence: 56 - UAACAGUCUCCAGUCACGGCC - 76
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-212-5p

• Accession: MIMAT0026692
• Description: Monodelphis domestica mdo-miR-212-5p mature miRNA
• Sequence: 16 - ACCUUGGCUCUAGACUGCUUACU - 38
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45