Stem-loop bta-mir-1343

Accession

MI0011338

Description

Bos taurus bta-mir-1343 precursor miRNA

Literature search

2 open access papers mention bta-mir-1343
(5 sentences)

Sequence

1008 reads, 32 reads per million, 68 experiments

ggcuucggugcUGGGGAGCGGCCCCCGGGCGGGccucugcucuggcccCUCCUGGGGCCCGCACUCUCgcuccgggcc
((((.(((.((.((((.((((.(((((((.(((((........)))))..))))))).)))).)))).)).)))))))

Structure

    u   u  U    A    C       -C     ucu 
ggcu cgg gc GGGG GCGG CCCCGGG  GGGcc   g
|||| ||| || |||| |||| |||||||  |||||    
ccgg gcc cg UCUC CGCC GGGGUCC  cccgg   c
    -   u  C    A    C       UC     ucu 

Annotation confidence Not enough data

Genome context

chr15: 66591432-66591509 [+]

Mature bta-miR-1343-5p

• Accession: MIMAT0011839
• Description: Bos taurus bta-miR-1343-5p mature miRNA
• Sequence: 12 - UGGGGAGCGGCCCCCGGGCGGG - 33
• Evidence: experimental ; Illumina [1-2]

Mature bta-miR-1343-3p

• Accession: MIMAT0011840
• Description: Bos taurus bta-miR-1343-3p mature miRNA
• Sequence: 49 - CUCCUGGGGCCCGCACUCUC - 68
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 19633723
   Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection
   Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ
   PLoS One (2009) 4:e6349


2. PubMed ID: 21912509
   Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle
   "Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J"
   "Int J Biol Sci (2011) 7:1016-1026