Stem-loop sha-mir-204

Accession

MI0019617

Description

Sarcophilus harrisii sha-mir-204 precursor miRNA

Gene family

MIPF0000042; mir-204

Sequence

gggaaaggagcuucugaccauauaaccauggcuaccgucucucuccaugugacucguggacuucccuuugucauccuaugccugagaauauaugaaggggGCUGGGAAGGCAAAGGGACGUucaguugucaucauuggcaucucuuuuga
((((..((((((..((..........)).)))).)).))))...(((((((((...(((((.((((((((((.(((((.((((...............))))))))).)))))))))).)))))...)))).)).)))............

Structure

gggaaaggagcuucugaccauauaaccauggcuaccgucucucu   -  -    ucg     u          a     u    gagaau 
                                            cca ug ugac   uggac ucccuuuguc uccua gccu      a
                                            ||| || ||||   ||||| |||||||||| ||||| ||||      u
                                            ggu ac acug   acuUG AGGGAAACGG AGGGU CGgg      a
--------------------------------aguuuucucuac   u  u    uug     C          A     -    ggaagu 

Annotation confidence Not enough data

Genome context

GL841514.1: 388049-388198 [+]

Mature sha-miR-204

• Accession: MIMAT0022790
• Description: Sarcophilus harrisii sha-miR-204 mature miRNA
• Sequence: 101 - GCUGGGAAGGCAAAGGGACGU - 121
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87