Stem-loop sha-let-7g

Accession

MI0019621

Description

Sarcophilus harrisii sha-let-7g precursor miRNA

Gene family

MIPF0000002; let-7

Literature search

1 open access papers mention sha-let-7g
(1 sentences)

Sequence

cacccuguuuccuucugccugauuccaggcUGAGGUAGUAGUUUGUACAGUuugagggucuaugauaccacccgguacaggagauaacuguacaggccacugccuugccagggacagagcgcugccaccaacaaugguuuguagcagagc
................(((((.((((.(((.((((((((.((((((((((((.....((((.((.((((....))))))..)))))))))))))))).))))))))))).))))))).))(((((.((((....))))..))))).....

Structure

--------------cacccuguuuccuucu  -   a    a   U        A            ugagg    -a  a    a 
                              gc cug uucc ggc GAGGUAGU GUUUGUACAGUu     gucu  ug uacc c
                              || ||| |||| ||| |||||||| ||||||||||||     ||||  || ||||  
                              cg gac aggg ccg uuccguca cggacaugucaa     uaga  ac augg c
cgagacgauguuugguaacaaccaccgucg  a   -    a   -        c            -----    gg  -    c 

Annotation confidence Not enough data

Genome context

GL841618.1: 10114-10263 [+]

Mature sha-let-7g

• Accession: MIMAT0022794
• Description: Sarcophilus harrisii sha-let-7g mature miRNA
• Sequence: 31 - UGAGGUAGUAGUUUGUACAGU - 51
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20044575
   The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer
   "Murchison EP, Tovar C, Hsu A, Bender HS, Kheradpour P, Rebbeck CA, Obendorf D, Conlan C, Bahlo M, Blizzard CA, Pyecroft S, Kreiss A, Kellis M, Stark A, Harkins TT, Marshall Graves JA, Woods GM, Hannon GJ, Papenfuss AT"
   "Science (2010) 327:84-87