miRBase entry: der-mir-975

Stem-loop der-mir-975

Accession

MI0030925

Description

Drosophila erecta der-mir-975 precursor miRNA

Sequence

uugaauucuugacuuUAAACACUUCCUACAUCCUGUAUguguuuugcgcccuauACAGAUGUGGGGGUCGUUUGCacucagggauuccaca
..((((((((((...((((((((.((((((((.(((((((((...))))...)))))))))))))))).)))))...))))))))))....

Structure

--uu          cuu     -   U        C     ---    u 
    gaauucuuga   UAAAC ACU CCUACAUC UGUAU   gugu  
    ||||||||||   ||||| ||| |||||||| |||||   |||| u
    cuuagggacu   GUUUG UGG GGGUGUAG ACAua   cgcg  
acac          caC     C   -        -     ucc    u

Annotation confidence Not enough data

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Genome context

scaffold_4690: 9688771-9688861 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from der-mir-975

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature der-miR-975-5p

Accession	MIMAT0039208
Description	Drosophila erecta der-miR-975-5p mature miRNA
Sequence	16 - UAAACACUUCCUACAUCCUGUAU - 38
Evidence	experimental Illumina [1]

Mature der-miR-975-3p

Accession	MIMAT0039209
Description	Drosophila erecta der-miR-975-3p mature miRNA
Sequence	55 - ACAGAUGUGGGGGUCGUUUGC - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250