miRBase entry: dvi-mir-9542e

Stem-loop dvi-mir-9542e

Accession

MI0030978

Description

Drosophila virilis dvi-mir-9542e precursor miRNA

Sequence

ACUGGUACUCCGUACUCAAAGagcgaauucugcauacucUUUGCGUGCAGAGGGCUAGAUc
.(((((.(((.((((.(((((((.............))))))).)))).))).)))))...

Structure

--A     A   C    U       cgaau 
   CUGGU CUC GUAC CAAAGag     u
   ||||| ||| |||| |||||||     c
   GAUCG GAG CGUG GUUUcuc     u
cUA     G   A    C       auacg

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_12970: 9417366-9417426 [-]

Clustered miRNAs

10 other miRNAs are < 10 kb from dvi-mir-9542e

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dvi-miR-9542e-5p

Accession	MIMAT0039301
Description	Drosophila virilis dvi-miR-9542e-5p mature miRNA
Sequence	1 - ACUGGUACUCCGUACUCAAAG - 21
Evidence	experimental Illumina [1]

Mature dvi-miR-9542e-3p

Accession	MIMAT0039302
Description	Drosophila virilis dvi-miR-9542e-3p mature miRNA
Sequence	40 - UUUGCGUGCAGAGGGCUAGAU - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250