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miRBase |
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Stem-loop sequence cel-mir-56 |
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Accession | MI0000027 (change log) | |||||||||
Description | Caenorhabditis elegans miR-56 stem-loop | |||||||||
Gene family | MIPF0001735; mir-56 | |||||||||
Literature search |
5 open access papers mention cel-mir-56 | |||||||||
Stem-loop |
-ga - gu u ug uc u ugu - ucc 5' gc ca guc guucu gcgga cauu ugggu acc uca u || || ||| ||||| ||||| |||| ||||| ||| ||| a 3' cg gu cag caaga cgccu guaa gccca ugg agu a cca u -- c gu uu u --- c uua |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence cel-miR-56-5p |
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Accession | MIMAT0000027 |
Previous IDs | cel-miR-56* |
Sequence |
18 - uggcggauccauuuuggguuguacc - 42 |
Deep sequencing | 1438 reads, 14 experiments |
Evidence | experimental; cloned [1], CLIPseq [7] |
Database links |
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Predicted targets |
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Mature sequence cel-miR-56-3p |
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Accession | MIMAT0000028 |
Previous IDs | cel-miR-56 |
Sequence |
61 - uacccguaauguuuccgcugag - 82 |
Deep sequencing | 553388 reads, 17 experiments |
Evidence | experimental; cloned [1-3], Northern [1], PCR [4], 454 [5], Illumina [6], CLIPseq [7] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:11679671
"An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans"
Science. 294:858-862(2001).
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2 |
PMID:12672692
"The microRNAs of Caenorhabditis elegans"
Genes Dev. 17:991-1008(2003).
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3 |
PMID:12747828
"MicroRNAs and other tiny endogenous RNAs in C. elegans"
Curr Biol. 13:807-818(2003).
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4 |
PMID:12769849
"Computational and experimental identification of C. elegans microRNAs"
Mol Cell. 11:1253-1263(2003).
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5 |
PMID:17174894
"Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans"
Cell. 127:1193-1207(2006).
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7 |
PMID:20062054
"Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans"
Nat Struct Mol Biol. 17:173-179(2010).
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