Stem-loop sequence cel-mir-60

AccessionMI0000031 (change log)
DescriptionCaenorhabditis elegans miR-60 stem-loop
Gene family MIPF0000298; mir-60
Literature search

4 open access papers mention cel-mir-60
(4 sentences)

Stem-loop 
   cucgaaaaccgcuugu               -    c    a      aca 
5'                 ucuugaacuggaaga gugc auaa aucaug   a
                   ||||||||||||||| |||| |||| ||||||    
3'                 agaacuugaucuuuu cacg uauu uagugc   a
   ----gcuaaagaguuc               a    -    a      aug
Get sequence
Deep sequencing
87458 reads, 2.01e+03 reads per million, 17 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (WBcel235; GCA_000002985.3) Overlapping transcripts
chrII: 6328702-6328799 [-]
intergenic
Database links

Mature sequence cel-miR-60-5p

Accession MIMAT0015102
Previous IDscel-miR-60*
Sequence

22 -  

aacuggaagagugccauaaaauc

 - 44

Get sequence
Deep sequencing1284 reads, 17 experiments
Evidence experimental; CLIPseq [7]
Database links
Predicted targets

Mature sequence cel-miR-60-3p

Accession MIMAT0000032
Previous IDscel-miR-60
Sequence

61 -  

uauuaugcacauuuucuaguuca

 - 83

Get sequence
Deep sequencing86163 reads, 17 experiments
Evidence experimental; cloned [1-4], 454 [5], Illumina [6], CLIPseq [7]
Database links
Predicted targets

References

1
PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).
2
PMID:11679672 "An extensive class of small RNAs in Caenorhabditis elegans" Lee RC, Ambros V Science. 294:862-864(2001).
3
PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).
4
PMID:12747828 "MicroRNAs and other tiny endogenous RNAs in C. elegans" Ambros V, Lee RC, Lavanway A, Williams PT, Jewell D Curr Biol. 13:807-818(2003).
5
PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
6
PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
7
PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).