Stem-loop cel-mir-62

Accession

MI0000033

Description

Caenorhabditis elegans cel-mir-62 precursor miRNA

Gene family

MIPF0000296; mir-62

Literature search

2 open access papers mention cel-mir-62
(12 sentences)

Sequence

16334 reads, 923 reads per million, 14 experiments

gugaguuagaucucauauccuuccgcaaaauggaaaUGAUAUGUAAUCUAGCUUACAG
(((((((((((..((((((.(((((.....)))))..))))))..)))))))))))..

Structure

--           cu      -c     c 
  gugaguuagau  cauauc  uuccg a
  |||||||||||  ||||||  ||||| a
  CAUUCGAUCUA  GUAUAG  aaggu a
GA           AU      Ua     a 

Annotation confidence Not enough data

Genome context

chrX: 12692608-12692665 [+]

Mature cel-miR-62

• Accession: MIMAT0000034
• Description: Caenorhabditis elegans cel-miR-62 mature miRNA
• Sequence: 37 - UGAUAUGUAAUCUAGCUUACAG - 58
• Evidence: experimental ; cloned [1-3], 454 [4], Illumina [6], CLIPseq [7]

References

1. PubMed ID: 11679671
   An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
   "Lau NC, Lim LP, Weinstein EG, Bartel DP"
   "Science (2001) 294:858-862


2. PubMed ID: 12672692
   The microRNAs of Caenorhabditis elegans
   "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
   "Genes Dev (2003) 17:991-1008


3. PubMed ID: 17174894
   Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
   "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
   "Cell (2006) 127:1193-1207


4. PubMed ID: 19460142
   Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
   Kato M, de Lencastre A, Pincus Z, Slack FJ
   Genome Biol (2009) 10:R54


5. PubMed ID: 20062054
   Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
   "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
   "Nat Struct Mol Biol (2010) 17:173-179


6. PubMed ID: 11679672
   An extensive class of small RNAs in Caenorhabditis elegans
   "Lee RC, Ambros V"
   "Science (2001) 294:862-864


7. PubMed ID: 17589500
   Intronic microRNA precursors that bypass Drosha processing
   "Ruby JG, Jan CH, Bartel DP"
   "Nature (2007) 448:83-86