Stem-loop sequence cel-mir-77

Accession

MI0000048 (change log)

Description

Caenorhabditis elegans miR-77 stem-loop

Gene family

MIPF0000272; mir-77

Literature search

2 open access papers mention cel-mir-77
(2 sentences)

Stem-loop

   gcaucugc     - ---   c               cu    g     ac   c 
5'         caaac c   gcc guuuggaugguugug  cuga gaaau  gca a
           ||||| |   ||| |||||||||||||||  |||| |||||  ||| g
3'         guuug g   ugg uaaaccugucgauac  gacu cuuua  ugu a
   --------     a aua   u               cg    a     -c   a 

Deep sequencing

160536 reads, 3.1e+03 reads per million, 14 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (WBcel235; GCA_000002985.3): chrII: 12519268-12519367 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000031E740_6239
• miRBase Tracker:MI0000048

Mature sequence cel-miR-77-5p

• Accession: MIMAT0020774
• Sequence: 24 - gaugguugugcucugaggaaau - 45
• Deep sequencing: 21449 reads, 13 experiments
• Evidence: experimental; Illumina [6]
• Database links:
  • RNAcentral:URS00004F5F8D_6239

Mature sequence cel-miR-77-3p

• Accession: MIMAT0000049
• Previous IDs: cel-miR-77
• Sequence: 62 - uucaucaggccauagcugucca - 83
• Deep sequencing: 139075 reads, 13 experiments
• Evidence: experimental; cloned [1-2], 454 [3], Illumina [4,6], CLIPseq [5]
• Database links:
  • RNAcentral:URS00002934DE_6239
• Predicted targets:
  • TargetScanWorm:cel-miR-77
  • microrna.org:cel-miR-77-3p

References

1. PMID:11679671 "An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans" Lau NC, Lim LP, Weinstein EG, Bartel DP Science. 294:858-862(2001).
2. PMID:12672692 "The microRNAs of Caenorhabditis elegans" Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP Genes Dev. 17:991-1008(2003).
3. PMID:17174894 "Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans" Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP Cell. 127:1193-1207(2006).
4. PMID:19460142 "Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development" Kato M, de Lencastre A, Pincus Z, Slack FJ Genome Biol. 10:R54(2009).
5. PMID:20062054 "Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans" Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW Nat Struct Mol Biol. 17:173-179(2010).
6. PMID:21307183 "Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer" Warf MB, Johnson WE, Bass BL RNA. 17:563-577(2011).