Stem-loop sequence ath-MIR162b

AccessionMI0000195 (change log)
DescriptionArabidopsis thaliana miR162b stem-loop
Gene family MIPF0000127; MIR162_1
Literature search

17 open access papers mention ath-MIR162b
(45 sentences)

Stem-loop 
       g    --       g    c    c       a    ------c        uuu 
5' gagu aagu  cgcugga gcag gguu aucgauc auuc       ugugaaua   a
   |||| ||||  ||||||| |||| |||| ||||||| ||||       ||||||||    
3' cucg uucg  gcgaccu cguc ccaa uagcuag uaag       acauuugu   u
       -    uc       a    u    a       c    aacgaaa        uuu
Get sequence
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (TAIR10; GCA_000001735.1) Overlapping transcripts
chr5: 7740598-7740708 [-]
intergenic
Database links

Mature sequence ath-miR162b-5p

Accession MIMAT0031877
Sequence

13 -  

uggaggcagcgguucaucgauc

 - 34

Get sequence
Evidence not experimental

Mature sequence ath-miR162b-3p

Accession MIMAT0000183
Previous IDsath-miR162b
Sequence

79 -  

ucgauaaaccucugcauccag

 - 99

Get sequence
Evidence experimental; cloned [1,3], Northern [1], 3'RACE [3], 5'RACE [3], 454 [4-5], MPSS [4]

References

1
PMID:12101121 "MicroRNAs in plants" Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP Genes Dev. 16:1616-1626(2002).
2
PMID:12202040 "Prediction of plant microRNA targets" Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP Cell. 110:513-520(2002).
3
PMID:16040653 "Expression of Arabidopsis MIRNA genes" Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC Plant Physiol. 138:2145-2154(2005).
4
PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC Genome Res. 16:1276-1288(2006).
5
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).