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MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant |
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|---|---|
| PubMed ID | 16954541 |
| Authors | "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC" |
| Journal | "Genome Res |
| Volume | 16 |
| Pages | 1276-1288 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| ath-MIR156a | MI0000178 | None | chr2 | 10676451 | 10676573 | - | High |
| ath-MIR156b | MI0000179 | None | chr4 | 15074899 | 15075081 | + | High |
| ath-MIR156c | MI0000180 | None | chr4 | 15415418 | 15415521 | - | High |
| ath-MIR156d | MI0000181 | None | chr5 | 3456632 | 3456749 | - | High |
| ath-MIR156e | MI0000182 | None | chr5 | 3867207 | 3867313 | + | High |
| ath-MIR156f | MI0000183 | None | chr5 | 9136106 | 9136237 | + | High |
| ath-MIR157a | MI0000184 | None | chr1 | 24913202 | 24913299 | - | High |
| ath-MIR157b | MI0000185 | None | chr1 | 24921086 | 24921217 | + | High |
| ath-MIR157c | MI0000186 | None | chr3 | 6244500 | 6244716 | - | High |
| ath-MIR157d | MI0000187 | None | chr1 | 18026811 | 18027031 | - | High |
| ath-MIR158a | MI0000188 | None | chr3 | 3366331 | 3366430 | - | High |
| ath-MIR159a | MI0000189 | None | chr1 | 27713233 | 27713416 | - | High |
| ath-MIR160a | MI0000190 | None | chr2 | 16340279 | 16340363 | + | High |
| ath-MIR160b | MI0000191 | None | chr4 | 9888982 | 9889070 | + | High |
| ath-MIR160c | MI0000192 | None | chr5 | 19009094 | 19009182 | - | High |
| ath-MIR161 | MI0000193 | None | chr1 | 17825685 | 17825857 | + | High |
| ath-MIR162a | MI0000194 | None | chr5 | 2634905 | 2635044 | - | High |
| ath-MIR162b | MI0000195 | None | chr5 | 7740598 | 7740708 | - | High |
| ath-MIR163 | MI0000196 | None | chr1 | 24884066 | 24884396 | + | High |
| ath-MIR164a | MI0000197 | None | chr2 | 19520752 | 19520864 | + | High |
| ath-MIR164b | MI0000198 | None | chr5 | 287584 | 287736 | + | High |
| ath-MIR165a | MI0000199 | None | chr1 | 78927 | 79037 | - | High |
| ath-MIR165b | MI0000200 | None | chr4 | 369831 | 370012 | - | High |
| ath-MIR166a | MI0000201 | None | chr2 | 19176108 | 19176277 | + | High |
| ath-MIR166b | MI0000202 | None | chr3 | 22922206 | 22922325 | + | High |
| ath-MIR166c | MI0000203 | None | chr5 | 2838635 | 2838773 | + | High |
| ath-MIR166d | MI0000204 | None | chr5 | 2840622 | 2840734 | + | High |
| ath-MIR166e | MI0000205 | None | chr5 | 16775520 | 16775662 | - | High |
| ath-MIR166f | MI0000206 | None | chr5 | 17516301 | 17516405 | + | High |
| ath-MIR166g | MI0000207 | None | chr5 | 25504798 | 25504919 | + | High |
| ath-MIR167a | MI0000208 | None | chr3 | 8108072 | 8108209 | + | High |
| ath-MIR167b | MI0000209 | None | chr3 | 23406168 | 23406276 | + | High |
| ath-MIR168a | MI0000210 | None | chr4 | 10578635 | 10578772 | + | High |
| ath-MIR168b | MI0000211 | None | chr5 | 18358788 | 18358911 | - | High |
| ath-MIR169a | MI0000212 | None | chr3 | 4358994 | 4359219 | - | High |
| ath-MIR170 | MI0000213 | None | chr5 | 26411580 | 26411672 | - | High |
| ath-MIR171a | MI0000214 | None | chr3 | 19073434 | 19073556 | + | High |
| ath-MIR172a | MI0000215 | None | chr2 | 11942914 | 11943015 | - | High |
| ath-MIR172b | MI0000216 | None | chr5 | 1188207 | 1188301 | - | High |
| ath-MIR173 | MI0000217 | None | chr3 | 8236153 | 8236254 | + | Medium |
| ath-MIR159b | MI0000218 | None | chr1 | 6220646 | 6220841 | + | High |
| ath-MIR319a | MI0000544 | None | chr4 | 12352956 | 12353131 | + | High |
| ath-MIR319b | MI0000545 | None | chr5 | 16660469 | 16660640 | - | High |
| ath-MIR167d | MI0000975 | None | chr1 | 11137539 | 11137915 | + | High |
| ath-MIR169b | MI0000976 | None | chr5 | 8527469 | 8527649 | + | High |
| ath-MIR169c | MI0000977 | None | chr5 | 15870590 | 15871000 | - | High |
| ath-MIR169d | MI0000978 | None | chr1 | 20039463 | 20039616 | - | High |
| ath-MIR169e | MI0000979 | None | chr1 | 20041518 | 20041734 | + | High |
| ath-MIR169f | MI0000980 | None | chr3 | 4805684 | 4805850 | - | High |
| ath-MIR169g | MI0000981 | None | chr4 | 11482879 | 11483257 | - | High |
| ath-MIR169h | MI0000982 | None | chr1 | 6695420 | 6695609 | - | High |
| ath-MIR169i | MI0000983 | None | chr3 | 9871960 | 9872165 | - | High |
| ath-MIR169j | MI0000984 | None | chr3 | 9872333 | 9872553 | - | High |
| ath-MIR169k | MI0000985 | None | chr3 | 9875525 | 9875737 | - | High |
| ath-MIR169l | MI0000986 | None | chr3 | 9875893 | 9876103 | - | High |
| ath-MIR169m | MI0000987 | None | chr3 | 9878168 | 9878379 | - | High |
| ath-MIR169n | MI0000988 | None | chr3 | 9878540 | 9878754 | - | High |
| ath-MIR171b | MI0000989 | None | chr1 | 3961348 | 3961464 | - | High |
| ath-MIR171c | MI0000990 | None | chr1 | 22930089 | 22930204 | - | High |
| ath-MIR172c | MI0000991 | None | chr3 | 3599776 | 3599908 | - | High |
| ath-MIR172d | MI0000992 | None | chr3 | 20587904 | 20588027 | + | High |
| ath-MIR390a | MI0001000 | None | chr2 | 16061954 | 16062060 | + | High |
| ath-MIR390b | MI0001001 | None | chr5 | 23636947 | 23637066 | + | High |
| ath-MIR393a | MI0001003 | None | chr2 | 16652101 | 16652233 | + | High |
| ath-MIR393b | MI0001004 | None | chr3 | 20691647 | 20691806 | + | High |
| ath-MIR394a | MI0001005 | None | chr1 | 7058194 | 7058310 | + | High |
| ath-MIR394b | MI0001006 | None | chr1 | 28568808 | 28568928 | + | High |
| ath-MIR395a | MI0001007 | None | chr1 | 9363196 | 9363288 | - | High |
| ath-MIR395b | MI0001008 | None | chr1 | 9364471 | 9364570 | + | High |
| ath-MIR395c | MI0001009 | None | chr1 | 9367080 | 9367179 | + | High |
| ath-MIR395d | MI0001010 | None | chr1 | 26269979 | 26270078 | - | High |
| ath-MIR395e | MI0001011 | None | chr1 | 26272776 | 26272870 | - | High |
| ath-MIR395f | MI0001012 | None | chr1 | 26273858 | 26273969 | + | High |
| ath-MIR396a | MI0001013 | None | chr2 | 4142323 | 4142473 | - | High |
| ath-MIR396b | MI0001014 | None | chr5 | 13611798 | 13611932 | + | High |
| ath-MIR397a | MI0001015 | None | chr4 | 2625950 | 2626056 | + | High |
| ath-MIR397b | MI0001016 | None | chr4 | 7878652 | 7878760 | - | High |
| ath-MIR398a | MI0001017 | None | chr2 | 1040938 | 1041042 | + | High |
| ath-MIR398b | MI0001018 | None | chr5 | 4691022 | 4691137 | + | High |
| ath-MIR398c | MI0001019 | None | chr5 | 4694694 | 4694808 | + | High |
| ath-MIR399a | MI0001020 | None | chr1 | 10227073 | 10227195 | + | High |
| ath-MIR399b | MI0001021 | None | chr1 | 23345377 | 23345511 | - | High |
| ath-MIR399c | MI0001022 | None | chr5 | 24962485 | 24962598 | + | High |
| ath-MIR399d | MI0001023 | None | chr2 | 14442978 | 14443077 | - | High |
| ath-MIR399e | MI0001024 | None | chr2 | 14443504 | 14443612 | + | High |
| ath-MIR399f | MI0001025 | None | chr2 | 14444997 | 14445114 | + | High |
| ath-MIR400 | MI0001069 | None | chr1 | 11785936 | 11786037 | + | High |
| ath-MIR402 | MI0001071 | None | chr1 | 29016520 | 29016828 | + | Low |
| ath-MIR403 | MI0001072 | None | chr2 | 19415052 | 19415186 | + | High |
| ath-MIR408 | MI0001080 | None | chr2 | 19319814 | 19320031 | + | Medium |
| ath-MIR771 | MI0005101 | None | chr3 | 19659301 | 19659413 | - | Medium |
| ath-MIR472 | MI0005102 | None | chr1 | 4182132 | 4182299 | - | - |
| ath-MIR773a | MI0005103 | None | chr1 | 13067251 | 13067335 | + | High |
| ath-MIR774a | MI0005104 | None | chr1 | 22149936 | 22150033 | + | High |
| ath-MIR775 | MI0005105 | None | chr1 | 29422452 | 29422574 | + | High |
| ath-MIR776 | MI0005106 | None | chr1 | 22795618 | 22795735 | + | High |
| ath-MIR777 | MI0005107 | None | chr1 | 26638000 | 26638107 | + | High |
| ath-MIR778 | MI0005108 | None | chr2 | 17349437 | 17349574 | - | Medium |
| ath-MIR779 | MI0005109 | None | chr2 | 9560761 | 9560923 | + | High |
| ath-MIR780 | MI0005110 | None | chr4 | 8504141 | 8504314 | - | High |
| ath-MIR781a | MI0005111 | None | chr1 | 7423518 | 7423611 | + | High |
| ath-MIR782 | MI0005112 | None | chr3 | 5500037 | 5500147 | + | Medium |