Accession
MI0000180
Description
Arabidopsis thaliana
ath-MIR156c precursor miRNA
Literature search
86 open access papers mention ath-MIR156c
(830 sentences)
(830 sentences)
Sequence
5815036
reads,
16574.0
reads per million, 185 experiments
cgcauagaaaCUGACAGAAGAGAGUGAGCACAcaaaggcacuuugcauguucgaugcauuugcuucucuugcgUGCUCACUGCUCUAUCUGUCAGAUuccggcu
.((...(((.(((((((((((((((((((((.((((((((...(((((.....)))))..)))))...))).))))))))).)))).)))))))).)))..)).
.((...(((.(((((((((((((((((((((.((((((((...(((((.....)))))..)))))...))).))))))))).)))).)))))))).)))..)).
Structure
c aua a - - A --- cuu g gc gaa CUGACAGA AGAG AGUGAGCAC caa aggca ugcau u || ||| |||||||| |||| ||||||||| ||| ||||| ||||| u cg cuU GACUGUCU UCUC UCACUCGUg guu uucgu acgua c u -gc A A G c cuc -uu g
Annotation confidence
High
Do you think this miRNA is real?
Comments
MIR156c is thought to target 10 mRNAs coding for proteins containing the Squamosa-promoter Binding Protein (SBP) box [1]. The complementary sites are downstream of this conserved domain, within a poorly conserved protein-coding context or the 3' UTR [2].
Genome context
chr4: 15415418-15415521 [-]
Database links
Mature ath-miR156c-5p
| Accession | MIMAT0000168 |
| Description | Arabidopsis thaliana ath-miR156c-5p mature miRNA |
| Sequence | 11 - CUGACAGAAGAGAGUGAGCACA - 32 |
| Evidence |
experimental
cloned [1,3], Northern [1], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6] |
Mature ath-miR156c-3p
| Accession | MIMAT0031867 |
| Description | Arabidopsis thaliana ath-miR156c-3p mature miRNA |
| Sequence | 74 - UGCUCACUGCUCUAUCUGUCAGAU - 97 |
| Evidence | not_experimental |
References
|
