Stem-loop ath-MIR172d

Accession

MI0000992

Description

Arabidopsis thaliana ath-MIR172d precursor miRNA

Literature search

54 open access papers mention ath-MIR172d
(305 sentences)

Sequence

agucauuguuugcuauuGCAACAUCUUCAAGAUUCAGAaaucagauucucuuauggguuuucuuuugagccuuuauuuuuugguuugAGAAUCUUGAUGAUGCUGCAGcggcaauuaaauggcu
(((((((..(((((.(((((.((((.(((((((((..((((((((......((.((((((......)))))).))...))))))))..))))))))).)))).))))).)))))...)))))))

Structure

       -gu     a     A    U         AG        uucucu  u      uc 
agucauu   uugcu uuGCA CAUC UCAAGAUUC  Aaaucaga      ua ggguuu  u
|||||||   ||||| ||||| |||| |||||||||  ||||||||      || ||||||   
ucgguaa   aacgg GACGU GUAG AGUUCUAAG  uuugguuu      au uccgag  u
       auu     c     C    U         Ag        ---uuu  u      uu 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR172 family [1], later experimentally verified [2]. It is predicted to target mRNAs coding for APETALA2-like transcription factors.

Genome context

chr3: 20587904-20588027 [+]

Mature ath-miR172d-3p

• Accession: MIMAT0000923
• Description: Arabidopsis thaliana ath-miR172d-3p mature miRNA
• Sequence: 88 - AGAAUCUUGAUGAUGCUGCAG - 108
• Evidence: experimental ; cloned [2], 454 [3-4], MPSS [3], Illumina [5]

Mature ath-miR172d-5p

• Accession: MIMAT0031901
• Description: Arabidopsis thaliana ath-miR172d-5p mature miRNA
• Sequence: 18 - GCAACAUCUUCAAGAUUCAGA - 38
• Evidence: not_experimental

References

1. PubMed ID: 16040653
   Expression of Arabidopsis MIRNA genes
   "Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC"
   "Plant Physiol (2005) 138:2145-2154


2. PubMed ID: 16954541
   MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
   "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
   "Genome Res (2006) 16:1276-1288


3. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


4. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


5. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799