Accession
MI0000191
Description
Arabidopsis thaliana
ath-MIR160b precursor miRNA
Literature search
41 open access papers mention ath-MIR160b
(116 sentences)
(116 sentences)
Sequence
509339
reads,
1669.0
reads per million, 184 experiments
gucgUGCCUGGCUCCCUGUAUGCCAcaagaaaacaucgauuuaguuucaaaaucgaucacuagugGCGUACAGAGUAGUCAAGCAUGac
(((((((.((((((.(((((((((((.((.....((((((((.......))))))))..)).))))))))))).).))))).)))))))
(((((((.((((((.(((((((((((.((.....((((((((.......))))))))..)).))))))))))).).))))).)))))))
Structure
C - C a aaaac ag
gucgUGC UGGCU C CUGUAUGCCAc ag aucgauuu u
||||||| ||||| | ||||||||||| || |||||||| u
caGUACG ACUGA G GACAUGCGgug uc uagcuaaa u
A U A a ---ac ac
Annotation confidence
High
Do you think this miRNA is real?
Comments
MIR160b is thought to target mRNAs coding for auxin response factor proteins [2].
Genome context
chr4: 9888982-9889070 [+]
Database links
Mature ath-miR160b-5p
| Accession | MIMAT0000179 |
| Description | Arabidopsis thaliana ath-miR160b-5p mature miRNA |
| Sequence | 5 - UGCCUGGCUCCCUGUAUGCCA - 25 |
| Evidence |
experimental
cloned [1,3], Northern [1], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6] |
Mature ath-miR160b-3p
| Accession | MIMAT0053795 |
| Description | Arabidopsis thaliana ath-miR160b-3p mature miRNA |
| Sequence | 66 - GCGUACAGAGUAGUCAAGCAUG - 87 |
| Evidence |
experimental
unknown |
References
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