Accession
MI0000181
Description
Arabidopsis thaliana
ath-MIR156d precursor miRNA
Literature search
81 open access papers mention ath-MIR156d
(779 sentences)
(779 sentences)
Sequence
5860005
reads,
16809.0
reads per million, 185 experiments
gaugggggaaaagaaguUGACAGAAGAGAGUGAGCACAcaaaggggaaguuguauaaaaguuuuguauaugguugcuuuugcguGCUCACUCUCUUUUUGUCAUAacuucuccuucau
.((((((((...(((((((((((((((((((((((((.((((((.((...((((((((...))))))))...)).)))))).)))))))))))).))))))))..)))))))))))))
.((((((((...(((((((((((((((((((((((((.((((((.((...((((((((...))))))))...)).)))))).)))))))))))).))))))))..)))))))))))))
Structure
g aaa -- - A g agu a auggggga gaagu UGACAGAA GAGAGUGAGCAC caaagg ga uguauaaa |||||||| ||||| |||||||| |||||||||||| |||||| || |||||||| g uacuuccu cuuca ACUGUUUU CUCUCACUCGug guuuuc uu auauguuu - --- AU U c g ggu u
Annotation confidence
High
Do you think this miRNA is real?
Comments
MIR156d is thought to target 10 mRNAs coding for proteins containing the Squamosa-promoter Binding Protein (SBP) box [1]. The complementary sites are downstream of this conserved domain, within a poorly conserved protein-coding context or the 3' UTR [2].
Genome context
chr5: 3456632-3456749 [-]
Database links
Mature ath-miR156d-5p
| Accession | MIMAT0000169 |
| Description | Arabidopsis thaliana ath-miR156d-5p mature miRNA |
| Sequence | 18 - UGACAGAAGAGAGUGAGCACA - 38 |
| Evidence |
experimental
cloned [1,3], Northern [1], 454 [4-5], MPSS [4], Illumina [6] |
Mature ath-miR156d-3p
| Accession | MIMAT0031868 |
| Description | Arabidopsis thaliana ath-miR156d-3p mature miRNA |
| Sequence | 85 - GCUCACUCUCUUUUUGUCAUA - 105 |
| Evidence | not_experimental |
References
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