Stem-loop ath-MIR156d

Accession

MI0000181

Description

Arabidopsis thaliana ath-MIR156d precursor miRNA

Literature search

79 open access papers mention ath-MIR156d
(782 sentences)

Sequence

gaugggggaaaagaaguUGACAGAAGAGAGUGAGCACacaaaggggaaguuguauaaaaguuuuguauaugguugcuuuugcguGCUCACUCUCUUUUUGUCAUAACuucuccuucau
.((((((((...(((((((((((((((((((((((((.((((((.((...((((((((...))))))))...)).)))))).)))))))))))).))))))))..)))))))))))))

Structure

g        aaa     --        -            a      g  agu        a 
 auggggga   gaagu  UGACAGAA GAGAGUGAGCAC caaagg ga   uguauaaa  
 ||||||||   |||||  |||||||| |||||||||||| |||||| ||   |||||||| g
 uacuuccu   cuuCA  ACUGUUUU CUCUCACUCGug guuuuc uu   auauguuu  
-        ---     AU        U            c      g  ggu        u 

Annotation confidence Not enough data

Comments

MIR156d is thought to target 10 mRNAs coding for proteins containing the Squamosa-promoter Binding Protein (SBP) box [1]. The complementary sites are downstream of this conserved domain, within a poorly conserved protein-coding context or the 3' UTR [2].

Genome context

chr5: 3456632-3456749 [-]

Mature ath-miR156d-5p

• Accession: MIMAT0000169
• Description: Arabidopsis thaliana ath-miR156d-5p mature miRNA
• Sequence: 18 - UGACAGAAGAGAGUGAGCAC - 37
• Evidence: experimental ; cloned [1,3], Northern [1], 454 [4-5], MPSS [4], Illumina [6]

Mature ath-miR156d-3p

• Accession: MIMAT0031868
• Description: Arabidopsis thaliana ath-miR156d-3p mature miRNA
• Sequence: 85 - GCUCACUCUCUUUUUGUCAUAAC - 107
• Evidence: not_experimental

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626


2. PubMed ID: 12202040
   Prediction of plant microRNA targets
   "Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP"
   "Cell (2002) 110:513-520


3. PubMed ID: 16040653
   Expression of Arabidopsis MIRNA genes
   "Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC"
   "Plant Physiol (2005) 138:2145-2154


4. PubMed ID: 16954541
   MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
   "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
   "Genome Res (2006) 16:1276-1288


5. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


6. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177