Stem-loop ath-MIR395b

Accession

MI0001008

Description

Arabidopsis thaliana ath-MIR395b precursor miRNA

Literature search

27 open access papers mention ath-MIR395b
(108 sentences)

Sequence

93066 reads, 576.0 reads per million, 179 experiments

auguccccaugaGUUCCCUUUAACGCUUCAUUGuuaaauacucaaagccacauugguuuguauacaacACUGAAGUGUUUGGGGGGACUCUuggugucau
(((.(.(((.((((((((((.(((((((((.((((..((((...((((((...))))))))))..)))).))))))))).)))))))))).))).).)))

Structure

   u c   u          U         U    aa    uca      c 
aug c cca gaGUUCCCUU AACGCUUCA UGuu  auac   aagcca  
||| | ||| |||||||||| ||||||||| ||||  ||||   |||||| a
uac g ggu CUCAGGGGGG UUGUGAAGU Acaa  uaug   uuuggu  
   u u   U          U         C    ca    ---      u 

Annotation confidence High

Comments

This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1].

Genome context

chr1: 9364471-9364570 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ath-MIR395b

Mature ath-miR395b-5p

• Accession: MIMAT0053821
• Description: Arabidopsis thaliana ath-miR395b-5p mature miRNA
• Sequence: 13 - GUUCCCUUUAACGCUUCAUUG - 33
• Evidence: experimental ; unknown

Mature ath-miR395b-3p

• Accession: MIMAT0000939
• Description: Arabidopsis thaliana ath-miR395b-3p mature miRNA
• Sequence: 69 - ACUGAAGUGUUUGGGGGGACUCU - 91
• Evidence: experimental ; 5'RACE [1], Northern [1], PCR [1], MPSS [2], 454 [3], Illumina [4]

References

1. PubMed ID: 16954541
   MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
   "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
   "Genome Res (2006) 16:1276-1288


2. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


3. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


4. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799