Accession
MI0000206
Description
Arabidopsis thaliana
ath-MIR166f precursor miRNA
Literature search
38 open access papers mention ath-MIR166f
(293 sentences)
(293 sentences)
Sequence
64478307
reads,
198906.0
reads per million, 185 experiments
aaguucaggUGAAUGAUGCCUGGCUCGAGAccauucaaucucaugaucucaugauuauaacgaugaugaugaugaugUCGGACCAGGCUUCAUUCCCCUcaacuu
(((((.(((.((((((.((((((.((((.(.((((..(((((((((((....))))))...)).)))...)))).).)))).)))))).)))))).))).)))))
(((((.(((.((((((.((((((.((((.(.((((..(((((((((((....))))))...)).)))...)))).).)))).)))))).)))))).))).)))))
Structure
c U U C G c -ca - --- u
aaguu agg GAAUGA GCCUGG UCGA A cauu auc uc augauc c
||||| ||| |||||| |||||| |||| | |||| ||| || ||||||
uucaa UCC CUUACU CGGACC GGCU u guag uag ag uauuag a
c C U A g a uag u caa u
Annotation confidence
High
Do you think this miRNA is real?
Comments
MIR166f, like miR165, is thought to target mRNAs coding for HD-Zip transcription factors including Phabulosa (PHB) and Phavoluta (PHV) that regulate axillary meristem initiation and leaf development [2].
Genome context
chr5: 17516301-17516405 [+]
Database links
Mature ath-miR166f-5p
| Accession | MIMAT0053801 |
| Description | Arabidopsis thaliana ath-miR166f-5p mature miRNA |
| Sequence | 10 - UGAAUGAUGCCUGGCUCGAGA - 30 |
| Evidence |
experimental
unknown |
Mature ath-miR166f-3p
| Accession | MIMAT0000194 |
| Description | Arabidopsis thaliana ath-miR166f-3p mature miRNA |
| Sequence | 78 - UCGGACCAGGCUUCAUUCCCCU - 99 |
| Evidence |
experimental
cloned [1,3], Northern [1], 3'RACE [3], 454 [4-5], MPSS [4], Illumina [6] |
References
|
