Accession
MI0000178
Description
Arabidopsis thaliana
ath-MIR156a precursor miRNA
Literature search
93 open access papers mention ath-MIR156a
(975 sentences)
(975 sentences)
Sequence
5802731
reads,
16524.0
reads per million, 185 experiments
caagagaaacgcaaagaaaCUGACAGAAGAGAGUGAGCACAcaaaggcaauuugcauaucauugcacuugcuucucuugcgUGCUCACUGCUCUUUCUGUCAGAUuccggugcugaucucuuu
.((((((...(((..(((.(((((((((((((((((((((.(((((((((..((((......)))).))))))...))).))))))))).))).))))))))).)))...)))...)))))).
.((((((...(((..(((.(((((((((((((((((((((.(((((((((..((((......)))).))))))...))).))))))))).))).))))))))).)))...)))...)))))).
Structure
c aac -aa a - - A --- uu ua aagaga gca gaa CUGACAGAA GAG AGUGAGCAC caa aggcaa ugca u |||||| ||| ||| ||||||||| ||| ||||||||| ||| |||||| |||| uucucu cgu cuU GACUGUCUU CUC UCACUCGUg guu uucguu acgu c u agu ggc A U G c cuc -c ua
Annotation confidence
High
Do you think this miRNA is real?
Comments
MIR156a is thought to target 10 mRNAs coding for proteins containing the Squamosa-promoter Binding Protein (SBP) box [1]. The complementary sites are downstream of this conserved domain, within a poorly conserved protein-coding context or the 3' UTR [2].
Genome context
chr2: 10676451-10676573 [-]
Database links
Mature ath-miR156a-5p
| Accession | MIMAT0000166 |
| Description | Arabidopsis thaliana ath-miR156a-5p mature miRNA |
| Sequence | 20 - CUGACAGAAGAGAGUGAGCACA - 41 |
| Evidence |
experimental
cloned [1,3], Northern [1], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6] |
Mature ath-miR156a-3p
| Accession | MIMAT0031865 |
| Description | Arabidopsis thaliana ath-miR156a-3p mature miRNA |
| Sequence | 82 - UGCUCACUGCUCUUUCUGUCAGAU - 105 |
| Evidence | not_experimental |
References
|
